Daniel S. Araujo, MS

Daniel S. Araujo, MS

Human Genetics PhD Candidate at the University of Chicago

Publications

Comparative genomics and stable isotope analysis reveal the saprotrophic-pathogenic lifestyle of a neotropical fungus

Published in mBio, 2024

Download paper here

Recommended citation: Luiz M. R. Tomé, Gabriel Quintanilha-Peixoto, Diogo H. Costa-Rezende, Carlos A. Salvador-Montoya, Domingos Cardoso, Daniel S. Araújo, Jorge M. Freitas, Gabriela B. Nardoto, Genivaldo Alves-Silva, Elisandro R. Drechsler-Santos, and Aristóteles Góes-Neto. "Comparative genomics and stable isotope analysis reveal the saprotrophic-pathogenic lifestyle of a neotropical fungus." mBio 15, no. 8 (2024): e01423-24. https://doi.org/10.1128/mbio.01423-24

Multivariate adaptive shrinkage improves cross-population transcriptome prediction and association studies in underrepresented populations

Published in Human Genetics and Genomics Advances, 2023

Download paper here

Recommended citation: Daniel S. Araujo, Chris Nguyen, Xiaowei Hu, Anna V. Mikhaylova, Chris Gignoux, Kristin Ardlie, Kent D. Taylor, Peter Durda, Yongmei Liu, George Papanicolaou, Michael H. Cho, Stephen S. Rich, Jerome I. Rotter, NHLBI TOPMed Consortium, Hae K. Im, Ani Manichaikul, and Heather E. Wheeler. "Multivariate adaptive shrinkage improves cross-population transcriptome prediction and association studies in underrepresented populations." Human Genetics and Genomics Advances (2023): 100216. https://doi.org/10.1016/j.xhgg.2023.100216

Unraveling the Secrets of a Double-Life Fungus by Genomics: Ophiocordyceps australis CCMB661 Displays Molecular Machinery for Both Parasitic and Endophytic Lifestyles

Published in Journal of Fungi, 2023

Download paper here

Recommended citation: Thaís A. de Menezes, Flávia F. Aburjaile, Gabriel Quintanilha-Peixoto, Luiz M. R. Tomé, Paula L. C. Fonseca, Thairine Mendes-Pereira, Daniel S. Araújo et al. "Unraveling the Secrets of a Double-Life Fungus by Genomics: Ophiocordyceps australis CCMB661 Displays Molecular Machinery for Both Parasitic and Endophytic Lifestyles." Journal of Fungi 9, no. 1 (2023): 110. https://doi.org/10.3390/jof9010110

Phylogenomics and gene selection in Aspergillus welwitschiae: Possible implications in the pathogenicity in Agave sisalana

Published in Genomics, 2022

Download paper here

Recommended citation: Gabriel Quintanilha-Peixoto, Marina P. Marone, Fábio T. Raya, Juliana José, Adriele Oliveira, Paula L. C. Fonseca, Luiz M. R. Tomé, Dener E. Bortolini, Rodrigo B. Kato, Daniel S. Araújo, et al. "Phylogenomics and gene selection in Aspergillus welwitschiae: Possible implications in the pathogenicity in Agave sisalana." Genomics 114, no. 6 (2022): 110517. https://doi.org/10.1016/j.ygeno.2022.110517

Global characterization of fungal mitogenomes: new insights on genomic diversity and dynamism of coding genes and accessory elements

Published in Frontiers in Microbiology, 2021

Download paper here

Recommended citation: Paula L.C. Fonseca‡, Ruth B. De-Paula‡, Daniel S. Araújo‡, Luiz M. R. Tomé, Thairine Mendes-Pereira, Wenderson F. C. Rodrigues, Luiz-Eduardo Del-Bem, Eric R. G. R. Aguiar, and Aristóteles Góes-Neto. "Global characterization of fungal mitogenomes: new insights on genomic diversity and dynamism of coding genes and accessory elements." Frontiers in Microbiology (2021): 3733. ‡Contributed equally. https://doi.org/10.3389/fmicb.2021.787283

Comparative mitogenomics of Agaricomycetes: Diversity, abundance, impact and coding potential of putative open-reading frames

Published in Mitochondrion, 2021

Download paper here

Recommended citation: Daniel S. Araújo, Ruth B. De-Paula, Luiz M. R. Tomé, Gabriel Quintanilha-Peixoto, Carlos A. Salvador-Montoya, Luiz-Eduardo Del-Bem, Fernanda Badotti et al. "Comparative mitogenomics of Agaricomycetes: Diversity, abundance, impact and coding potential of putative open-reading frames." Mitochondrion 58 (2021): 1-13. https://doi.org/10.1016/j.mito.2021.02.002

Exploring the relationship among divergence time and coding and non-coding elements in the shaping of fungal mitochondrial genomes

Published in Frontiers in Microbiology, 2020

Download paper here

Recommended citation: Paula L. C. Fonseca, Fernanda Badotti, Ruth B. De-Paula, Daniel S. Araújo, Dener E. Bortolini, Luiz-Eduardo Del-Bem, Vasco A. Azevedo, Bertram Brenig, Eric R. G. R. Aguiar, and Aristóteles Góes-Neto. "Exploring the relationship among divergence time and coding and non-coding elements in the shaping of fungal mitochondrial genomes." Frontiers in Microbiology 11 (2020): 765. https://doi.org/10.3389/fmicb.2020.00765